repic.commands.iter_config
==========================

.. py:module:: repic.commands.iter_config

.. autoapi-nested-parse::

   Creates config file (JSON format) of the general iterative ensemble particle picking parameters



Attributes
----------

.. autoapisummary::

   repic.commands.iter_config.name
   repic.commands.iter_config.env_dict
   repic.commands.iter_config.exp_deep_files
   repic.commands.iter_config.parser


Functions
---------

.. autoapisummary::

   repic.commands.iter_config.add_arguments
   repic.commands.iter_config.main


Module Contents
---------------

.. py:data:: name
   :value: 'iter_config'


   module name (used by argparse subparser)

   :type: str

.. py:data:: env_dict

   dictionary of default Conda enviroment names for SPHIRE-crYOLO, DeepPicker, and Topaz

   :type: dict

.. py:data:: exp_deep_files

   set of expected DeepPicker files (check for proper installation)

   :type: set

.. py:function:: add_arguments(parser)

   Adds argparse command line arguments for iter_config.py

   :param parser: argparse parse_args() object
   :type parser: object

   :returns: None


.. py:function:: main(args)

   Creates config file of general iterative ensemble particle picking parameters

   :param args: argparse command line argument object
   :type args: obj


.. py:data:: parser

   argparse parse_args() object

   :type: obj