repic.commands.iter_config

Creates config file (JSON format) of the general iterative ensemble particle picking parameters

Attributes

name	module name (used by argparse subparser)
env_dict	dictionary of default Conda enviroment names for SPHIRE-crYOLO, DeepPicker, and Topaz
exp_deep_files	set of expected DeepPicker files (check for proper installation)
parser	argparse parse_args() object

Functions

add_arguments(parser)	Adds argparse command line arguments for iter_config.py
main(args)	Creates config file of general iterative ensemble particle picking parameters

Module Contents

repic.commands.iter_config.name = 'iter_config'

module name (used by argparse subparser)

Type:

str

repic.commands.iter_config.env_dict

dictionary of default Conda enviroment names for SPHIRE-crYOLO, DeepPicker, and Topaz

Type:

dict

repic.commands.iter_config.exp_deep_files

set of expected DeepPicker files (check for proper installation)

Type:

set

repic.commands.iter_config.add_arguments(parser)

Adds argparse command line arguments for iter_config.py

Parameters:

parser (object) – argparse parse_args() object

Returns:

None

repic.commands.iter_config.main(args)

Creates config file of general iterative ensemble particle picking parameters

Parameters:

args (obj) – argparse command line argument object

repic.commands.iter_config.parser

argparse parse_args() object

Type:

obj