REPIC
latest
Contents:
Overview
Software requirements
Installation guide
Integration
Example data
Quick start
Creating consensus particle sets
Particle picking by iterative ensemble learning
Command line details
Identifying consensus particle sets with REPIC
Particle picking by iterative ensemble learning
Testing
Citing REPIC
Contact
Releases
new
v0.2.1
v0.2.0
v0.1.0
API Reference
repic
Subpackages
repic.commands
repic.utils
Submodules
repic.__version__
repic.main
Package Contents
__version__
REPIC
Index
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Index
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A
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B
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C
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D
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E
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F
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G
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I
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M
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N
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P
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R
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S
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T
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U
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W
_
__version__ (in module repic)
(in module repic.__version__)
_has_numbers() (in module repic.utils.coord_converter)
_is_int() (in module repic.utils.coord_converter)
_log() (in module repic.utils.coord_converter)
_make_parent_dir() (in module repic.utils.coord_converter)
_path_occupied() (in module repic.utils.coord_converter)
_row_is_all_nonnumeric() (in module repic.utils.coord_converter)
A
add_arguments() (in module repic.commands.get_cliques)
(in module repic.commands.iter_config)
(in module repic.commands.iter_pick)
(in module repic.commands.run_ilp)
(in module repic.utils.build_subsets)
add_nodes_to_graph() (in module repic.commands.get_cliques)
adjust_plot_attributes() (in module repic.utils.common)
AUTO (in module repic.utils.coord_converter)
B
Box (in module repic.utils.coord_converter)
BOX_HEADER_MAP (in module repic.utils.coord_converter)
box_id (in module repic.utils.common)
C
calc_jaccard() (in module repic.commands.get_cliques)
calc_subsets() (in module repic.utils.build_subsets)
CBOX_HEADER_MAP (in module repic.utils.coord_converter)
create_dir() (in module repic.utils.common)
create_symlinks() (in module repic.utils.build_subsets)
CS_HEADER_MAP (in module repic.utils.coord_converter)
cs_to_df() (in module repic.utils.coord_converter)
D
del_dir() (in module repic.utils.common)
DF_COL_NAMES (in module repic.utils.coord_converter)
df_to_star() (in module repic.utils.coord_converter)
df_to_tsv() (in module repic.utils.coord_converter)
E
env_dict (in module repic.commands.iter_config)
exp_deep_files (in module repic.commands.iter_config)
F
find_cliques() (in module repic.commands.get_cliques)
G
get_box_coords() (in module repic.utils.common)
get_box_vertex_entry() (in module repic.utils.common)
get_multi_in_coords() (in module repic.utils.common)
get_segmentation_scores() (in module repic.utils.score_detections)
I
is_float() (in module repic.utils.common)
M
main() (in module repic.commands.get_cliques)
(in module repic.commands.iter_config)
(in module repic.commands.iter_pick)
(in module repic.commands.run_ilp)
(in module repic.main)
(in module repic.utils.build_subsets)
module
repic
repic.__version__
repic.commands
repic.commands.get_cliques
repic.commands.iter_config
repic.commands.iter_pick
repic.commands.run_ilp
repic.main
repic.utils
repic.utils.build_subsets
repic.utils.common
repic.utils.coord_converter
repic.utils.score_detections
N
name (in module repic.commands.get_cliques)
(in module repic.commands.iter_config)
(in module repic.commands.iter_pick)
(in module repic.commands.run_ilp)
(in module repic.utils.build_subsets)
P
parser (in module repic.commands.get_cliques)
(in module repic.commands.iter_config)
(in module repic.commands.iter_pick)
(in module repic.commands.run_ilp)
(in module repic.utils.build_subsets)
(in module repic.utils.coord_converter)
(in module repic.utils.score_detections)
plot_defocus() (in module repic.utils.build_subsets)
plot_particle_weights() (in module repic.commands.run_ilp)
print (in module repic.utils.common)
process_conversion() (in module repic.utils.coord_converter)
R
repic
module
repic.__version__
module
repic.commands
module
repic.commands.get_cliques
module
repic.commands.iter_config
module
repic.commands.iter_pick
module
repic.commands.run_ilp
module
repic.main
module
repic.utils
module
repic.utils.build_subsets
module
repic.utils.common
module
repic.utils.coord_converter
module
repic.utils.score_detections
module
rng (in module repic.utils.build_subsets)
S
sample_from_bin() (in module repic.utils.build_subsets)
STAR_COL_C (in module repic.utils.coord_converter)
STAR_COL_N (in module repic.utils.coord_converter)
STAR_COL_X (in module repic.utils.coord_converter)
STAR_COL_Y (in module repic.utils.coord_converter)
STAR_HEADER_MAP (in module repic.utils.coord_converter)
star_to_df() (in module repic.utils.coord_converter)
T
TSV_HEADER_MAP (in module repic.utils.coord_converter)
tsv_to_df() (in module repic.utils.coord_converter)
U
use_gurobi (in module repic.commands.run_ilp)
,
[1]
W
write_pickle() (in module repic.utils.common)
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